SourceVahti

Reliable AI access to public health, government and research data.

SourceVahti is a Model Context Protocol (MCP) server that makes statistical definitions explicit before returning a number. Version 0.3 exposes four source-specific adapters and three read-only tools over local stdio:

• search_indicators

• get_observations

• get_latest_observation

The product is the ambiguity guard. “Mortality rate” may mean a crude rate or one of several age-standardised rates, and two publishers may produce valid but non-interchangeable values. SourceVahti returns a structured ambiguous_indicator error with the valid candidates instead of silently choosing one.

Current sources

All bundled data are frozen, reviewed snapshots. The MCP server makes no upstream requests during a tool call.

Finnish Cancer Registry

The snapshot contains the 2024 female lung and tracheal cancer mortality export. The public application exposes three rates for the same population and year:

It was retrieved on 2026-07-30 from the Finnish Cancer Registry statistics application. The latest official year was 2024 and the release date was 2026-04-24.

NORDCAN

The NORDCAN snapshot contains version 9.6 female lung-cancer mortality tables for 2023–2024. It covers Denmark, Finland, Greenland, Iceland, Norway, Sweden, the Faroe Islands' latest 2023 observation and two Nordic aggregates. Every geography retains crude, World, Nordic 2000, European 1976 and European 2013 rate definitions. NORDCAN 9.6 was released on 2026-06-30. See the database and statistical definitions.

WHO GHO

The WHO adapter contains 150 observations: female, male and both-sex modelled estimates for five Nordic countries at ten published years from 2000 through 2025. The indicator is current tobacco-use prevalence among people aged 15 years and over, standardised to the WHO standard population. Each value retains its 95% uncertainty bounds, modelled/projected status and source note.

This is contextual risk-factor data, not a cancer outcome or causal estimate. See the WHO indicator metadata.

Eurostat

The Eurostat adapter contains 195 annual observations for Denmark, Finland, Iceland, Norway and Sweden: female, male and both-sex rates from 2011 through 2023. It selects dataset HLTH_CD_ASDR2, unit RT, all ages and cause C33_C34. Rates are directly standardised to the European Standard Population 2013 and retain Eurostat status flags.

See the Eurostat causes-of-death metadata. Eurostat and NORDCAN are separate publishers; matching definitions make a source comparison possible but do not make their observations identical.

Related MCP server: Kolada MCP Server

Install and run

Requirements: Python 3.11 or newer and uv.

git clone https://github.com/heidihelena/sourcevahti.git
cd sourcevahti
uv sync --locked --all-extras --dev
uv run sourcevahti

sourcevahti starts a local stdio server. It should stay silent and wait for an MCP host because stdout carries the protocol.

For MCP Inspector:

uv run mcp dev src/sourcevahti/server.py:mcp

Generic MCP host configuration:

{
  "mcpServers": {
    "sourcevahti": {
      "command": "uv",
      "args": [
        "--directory",
        "/absolute/path/to/sourcevahti",
        "run",
        "sourcevahti"
      ]
    }
  }
}

Use an absolute path because an MCP host may start the server from a different working directory.

Examples

First search without selecting a Finnish rate definition:

{
  "query": "female lung cancer mortality rate",
  "source": "finnish_cancer_registry",
  "sex": "female",
  "unit": "per_100_000_person_years"
}

search_indicators returns three candidates. Retry get_latest_observation with the required definition:

{
  "query": "female lung cancer mortality rate",
  "source": "finnish_cancer_registry",
  "sex": "female",
  "rate_type": "age_standardised_finland_2014",
  "unit": "per_100_000_person_years"
}

The result includes the native source code, cancer definition, year, value, unit, sex, geography, rate type, standard population, observation status, citation URL, source version and release date, retrieval date and snapshot ID. The acceptance value is 23.28 per 100,000 person-years in 2024.

WHO risk-factor context:

{
  "query": "female Finland current tobacco use prevalence",
  "source": "who_gho",
  "sex": "female",
  "geography": "Finland",
  "unit": "percent"
}

This returns the 2025 projected estimate, 17.1%, with a 14.0–20.2% uncertainty interval and the WHO indicator definition.

Eurostat source comparison:

{
  "query": "female Finland lung cancer mortality European 2013",
  "source": "eurostat",
  "sex": "female",
  "geography": "Finland"
}

If source is omitted, a European-2013-standardised Nordic lung-cancer mortality query may correctly remain ambiguous between NORDCAN and Eurostat.

Tool contracts

search_indicators

Lexically searches indicator names, descriptions, definitions, native codes, health topic, cancer codes, source, geography, sex, unit, rate type and standard population. Recognised dimensional terms in the query become constraints. Explicit filters are validated and cannot contradict those terms. Epidemiologically distinct series are never collapsed.

get_observations

Returns one resolved series, optionally bounded by inclusive start_year and end_year. Supply an exact indicator_id, or a query plus sufficient dimensions to leave exactly one candidate.

get_latest_observation

Returns the highest-year observation in one resolved series. In addition to the shared provenance fields, an observation may include uncertainty bounds and a publisher note.

Supported canonical values:

• source: finnish_cancer_registry, nordcan, who_gho, eurostat

• sex: female, male, all

• unit: per_100_000_person_years, percent

• rate_type: crude, age_standardised_world, age_standardised_world_1966, age_standardised_finland_2014, age_standardised_nordic_2000, age_standardised_europe_1976, age_standardised_europe_2013, age_standardised_who

count remains reserved for future count indicators. Source-specific geography and semantic constraints are validated. Unknown categories and dimensional mismatches are rejected.

Architecture

MCP typed tools
    └── SourceCatalog
          ├── cross-source query resolution and ambiguity checks
          ├── FinnishCancerRegistryAdapter
          ├── NordcanAdapter
          ├── WhoGhoAdapter
          └── EurostatAdapter
                └── frozen source snapshots
                      └── strict Pydantic models + provenance

src/sourcevahti/models.py is the public schema. Version 0.3 adds a general health topic and indicator definition, measure type, percent units, uncertainty bounds, publisher notes, modelled/projected status and optional cancer fields. Cancer mortality observations still require an exact cancer definition and a per-100,000 rate.

The official MCP SDK derives JSON schemas from the typed functions and Pydantic models. Domain exceptions become MCP tool errors so a model can correct its request. Adapters remain source-specific; shared code handles normalised search, validation, duplicate detection and ambiguity.

Data refresh

Bundled snapshot files:

• src/sourcevahti/data/finnish_cancer_registry_2024.csv

• src/sourcevahti/data/nordcan_lung_mortality_9_6.csv

• src/sourcevahti/data/who_gho_tobacco_use_2026_01_15.csv

• src/sourcevahti/data/eurostat_lung_mortality_2026_06_08.csv

WHO and Eurostat have documented machine endpoints. Refresh their deliberately narrow matrices outside server startup:

uv run python scripts/refresh_context_snapshots.py

The script requests only the reviewed indicators/dimensions, rejects missing countries, short series, duplicate country-sex-year keys and negative values, then writes deterministic CSV files. Review diffs, metadata, terms and publisher flags before accepting them.

The Finnish Cancer Registry and NORDCAN interactive applications remain a manual trust boundary. Preserve raw exports outside the repository, verify all rate definitions and standard populations, update provenance with the normalised file, and confirm that ambiguity tests still expose every valid definition.

SourceVahti code is Apache-2.0. Source data retain publisher terms; every provenance object carries a separate license_note.

Deployment and DNS

The public endpoints are sourcevahti.vahtian.com for the hosted HTTP/MCP service and trends.ntog.org for the NTOG Shiny application. DNS records should only be created after each deployment supplies its canonical target hostname.

See docs/DNS.md for Cloudflare records, provider-side custom domain steps and verification commands.

Development

uv sync --locked --all-extras --dev
uv run --frozen ruff check .
uv run --frozen ruff format --check .
uv run --frozen mypy src
uv run --frozen pytest
uv build

Tests use frozen official responses and the SDK's in-memory MCP client. CI runs linting, type checking, tests and package builds on Python 3.11 and 3.13.

See CONTRIBUTING.md for source-update rules and SECURITY.md for responsible disclosure.

Licence

SourceVahti code is licensed under the Apache License, Version 2.0. No medical advice is provided. Always cite the source and preserve the returned epidemiological definition when reporting a value.