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moonx010
by moonx010
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Cross-project memory layer for AI coding agents — with graph memory

npm license node


Hive Memory is an MCP server that gives AI coding agents persistent, graph-connected memory across projects. It stores decisions, learnings, and session progress in a local knowledge base with brain-inspired synaptic connections — so your agent can discover related context through topology-based traversal, not just keyword search.

Features

  • 33 MCP tools — project management, memory storage/recall, graph traversal, browsing, connectors, team sync, meetings, stewardship, and admin

  • SQLite-backed — FTS5 full-text search, WAL mode, zero external services

  • Graph memory (synapses) — 15 axon types, Hebbian learning, spreading activation

  • Hybrid search — BM25 + optional vector similarity with RRF fusion

  • 4 connectors — GitHub, Slack, Notion, Google Calendar

  • Team sync — Git-based shared cortex for teams

  • Meeting pipeline — transcript → structured notes → enrichment

  • HTTP mode — Deploy on Railway/Render with per-user API keys and rate limiting

  • Docker support — Ready-to-run container with health check

  • Schema versioning — Tracked migration history in schema_meta table

  • Audit logging — In-memory audit trail for all tool calls

  • Backup CLIhive-memory backup [--output path] for database snapshots

Architecture

┌──────────────────────────────────────────────────────────┐
│                    Hive Memory (cortex)                   │
│                                                          │
│  ┌────────────┐  ┌──────────────┐  ┌─────────────────┐  │
│  │ MCP Server │  │  HTTP Server │  │   CLI Interface  │  │
│  │  (stdio)   │  │  (port 3179) │  │   (hive-memory)  │  │
│  └─────┬──────┘  └──────┬───────┘  └────────┬────────┘  │
│        └────────────────┼────────────────────┘           │
│                         │                                │
│  ┌──────────────────────▼────────────────────────────┐  │
│  │                   CortexStore                      │  │
│  │  ┌────────────┐  ┌──────────┐  ┌──────────────┐  │  │
│  │  │HiveDatabase│  │ Synapse  │  │ Enrichment   │  │  │
│  │  │ (SQLite)   │  │  Graph   │  │   Engine     │  │  │
│  │  └─────┬──────┘  └──────────┘  └──────────────┘  │  │
│  │        │                                           │  │
│  │  ┌─────▼──────────────────────────────────────┐  │  │
│  │  │         SQLite Database (cortex.db)          │  │  │
│  │  │  entities · synapses · sessions · projects  │  │  │
│  │  │  connectors · users · labels · schema_meta  │  │  │
│  │  └─────────────────────────────────────────────┘  │  │
│  └────────────────────────────────────────────────────┘  │
└──────────────────────────────────────────────────────────┘
         ▲              ▲              ▲
   ┌─────┴─────┐  ┌─────┴─────┐  ┌───┴──────┐
   │  GitHub   │  │   Slack   │  │  Notion  │
   │ Connector │  │ Connector │  │ Connector│
   └───────────┘  └───────────┘  └──────────┘

Quick Start

Install

npm install -g hive-memory

Claude Code

Add to ~/.claude/settings.json:

{
  "mcpServers": {
    "hive-memory": {
      "command": "hive-memory"
    }
  },
  "permissions": {
    "allow": [
      "mcp__hive-memory__*"
    ]
  }
}

The permissions.allow entry auto-approves all Hive Memory tools so Claude won't prompt for permission every session.

Claude Desktop

Add to your Claude Desktop config (claude_desktop_config.json):

{
  "mcpServers": {
    "hive-memory": {
      "command": "hive-memory"
    }
  }
}

Cursor

Add to .cursor/mcp.json in your project:

{
  "mcpServers": {
    "hive-memory": {
      "command": "hive-memory"
    }
  }
}

HTTP Mode (Remote Deployment)

CORTEX_HTTP=true CORTEX_AUTH_TOKEN=secret hive-memory --http

Or with Docker:

docker compose up

Agent Instructions

Hive Memory works best when your AI agent knows when to call the tools. Copy the provided instruction templates into your agent's instruction file:

Agent

Instruction file

Template

Claude Code

~/.claude/CLAUDE.md

claude-md-template.md

Codex

~/AGENTS.md or ./AGENTS.md

codex-md-template.md

See the full setup guide for step-by-step instructions.

Tools Reference (33 tools)

Project Tools (4)

Tool

Description

project_register

Register or update a project (upsert)

project_search

Search projects by name/tags, or list all (empty query)

project_status

Get project context (full mode includes cross-project insights)

project_onboard

Auto-discover projects in a directory + scan for agent memory files

Memory Tools (5)

Tool

Description

memory_store

Store a decision, learning, or note. Auto-creates synapses to related memories

memory_recall

Search using keyword matching + graph traversal (spreading activation)

memory_link

Form an explicit synapse between two memory entries

memory_traverse

Deep graph traversal — find memories connected through synaptic pathways

memory_connections

View the synaptic connections of a specific memory entry

Session Tools (1)

Tool

Description

session_save

Save session progress — what was done, what's next

Browse Tools (5)

Tool

Description

memory_ls

List entities with filters (project, type, status, domain)

memory_tree

Tree view of entities grouped by project and type

memory_grep

Regex/substring search across entity content

memory_inspect

Detailed view of a specific entity including synapses

memory_timeline

Chronological view of entities in a time range

Trail Tools (3)

Tool

Description

memory_trail

View the access trail of recently used memories

memory_who

See which agents have contributed to a project

memory_decay

Apply synapse weight decay and prune weak connections

Connector Tools (2)

Tool

Description

connector_sync

Trigger a connector sync (GitHub, Slack, Notion, Calendar)

connector_status

View sync status and entry counts for all connectors

Team Tools (4)

Tool

Description

team_init

Initialize a Git-based shared team cortex

team_push

Push local entries to the team cortex

team_pull

Pull team entries into local database

team_status

View pending push/pull and conflict count

Context Tools (2)

Tool

Description

context_enrich

Run enrichment on an entity (classification, topics, decisions)

entity_resolve

Find and deduplicate person entities across sources

Meeting Tools (2)

Tool

Description

meeting_process

Process a meeting transcript into structured notes and decisions

meeting_briefing

Generate a meeting briefing from recent meetings

Steward Tools (2)

Tool

Description

memory_audit

Run data quality audit on stored memories

memory_briefing

Generate daily or weekly memory briefing

Advisor Tools (1)

Tool

Description

workflow_analyze

Analyze workflow patterns and generate insights

User / Admin Tools (2)

Tool

Description

user_manage

Manage users — add, list, revoke, rotate API keys

memory_audit_log

Retrieve recent MCP tool call audit log (admin only)

Connectors

Connector

Env Variable

What it syncs

GitHub

GITHUB_TOKEN

PRs, Issues, ADRs, CODEOWNERS

Slack

SLACK_TOKEN

Signal-filtered messages, threads

Notion

NOTION_TOKEN

Pages, databases, block content

Google Calendar

GOOGLE_CALENDAR_CREDENTIALS

Events, attendees (OAuth2/service account)

Outlook

OUTLOOK_TOKEN

Calendar events

How It Works

┌──────────┐     ┌──────────┐     ┌──────────┐
│ Claude   │     │ Cursor   │     │ Codex    │
│ Code     │     │          │     │          │
│ (Proj A) │     │ (Proj B) │     │ (Proj C) │
└────┬─────┘     └────┬─────┘     └────┬─────┘
     │                │                │
     └────────────────┼────────────────┘
                      │ MCP (stdio)
               ┌─────────────┐
               │ Hive Memory │
               │  MCP Server │
               └──────┬──────┘
                      │
     ┌────────────────┼────────────────┐
     ▼                ▼                ▼
┌─────────┐    ┌───────────┐    ┌───────────┐
│ Hive    │    │ Synapse   │    │ Spreading │
│ Cell    │    │ Graph     │    │ Activation│
│ Tree    │    │ (LTP/LTD) │    │           │
└─────────┘    └───────────┘    └───────────┘

No cloud. No accounts. No embeddings required. Everything stays on your machine.

Graph Memory (Synapses)

Every memory can be connected to other memories through synapses — directed, weighted edges inspired by neuroscience:

"Use JWT for auth" ──[causal:0.8]──→ "Add token refresh logic"
        │                                      │
        │──[semantic:0.5]──→ "OAuth2 decision"  │
                                               │
"Rate limit API" ←──[dependency:0.6]───────────┘

Axon Types:

Type

Meaning

Example

temporal

A occurred before B

Decision A was made before Decision B

causal

A caused/led to B

"Use PostgreSQL" → "Add pgvector extension"

semantic

Topically related

Both about authentication

refinement

B refines/updates A

"Use JWT" → "Use JWT with 15min expiry"

conflict

A contradicts B

"Use SQL" vs "Use NoSQL"

dependency

B depends on A

Feature B requires Feature A

derived

B was derived from A

Learning extracted from a decision

Spreading Activation

When you search with memory_recall or memory_traverse, the system propagates signal through the synapse graph:

Query: "auth token handling"
  │
  ▼ keyword match
  Seed: "Use JWT for auth" (activation: 1.0)
  │
  ├─[causal:0.8]──→ "Add token refresh" (activation: 0.4)
  │                        │
  │                  ├─[dependency:0.6]──→ "Rate limit API" (activation: 0.12)
  │
  └─[semantic:0.5]──→ "OAuth2 decision" (activation: 0.25)

Hebbian Learning

"Neurons that fire together, wire together":

  • LTP (Long-Term Potentiation): When two memories are recalled together repeatedly, their synapse weight increases (+0.1 per co-activation)

  • LTD (Long-Term Depression): Unused synapses decay over time (×0.995 per flush cycle)

  • Pruning: Synapses below 0.05 weight are automatically removed

  • Auto-formation: When two memories are co-activated 5+ times, a Hebbian synapse is created automatically

HTTP Mode & Multi-User Setup

Deploy as an HTTP server for shared team access:

# Create an admin user
hive-memory user create admin-name

# Start HTTP server
CORTEX_HTTP=true CORTEX_AUTH_TOKEN=<token> hive-memory

# Or use Docker
docker compose up

API Key Rotation

hive-memory user rotate <user-id>

The new key is active immediately. The graceUntil timestamp is stored for audit purposes.

Rate Limiting

The HTTP server enforces a limit of 100 requests per minute per user (in-memory, per instance).

Auto Session Capture

Hive Memory can automatically save sessions when Claude Code exits. Add to ~/.claude/settings.json:

{
  "hooks": {
    "SessionEnd": [{
      "matcher": "",
      "hooks": [{
        "type": "command",
        "command": "hive-memory hook session-end"
      }]
    }]
  }
}

This parses the Claude Code transcript and auto-saves a session summary. It skips if session_save was already called during the session.

Backup

# Create a backup
hive-memory backup

# Specify output path
hive-memory backup --output /path/to/backup.db

Configuration

Environment Variables

Variable

Default

Description

CORTEX_DATA_DIR

~/.cortex

Data storage directory

CORTEX_LOCAL_SYNC

true

Set to "false" to disable writing .cortex.md into project directories

CORTEX_LOCAL_FILENAME

.cortex.md

Custom filename for local context files

CORTEX_HTTP

false

Set to "true" to enable HTTP server mode

CORTEX_AUTH_TOKEN

Admin API token for HTTP mode

PORT / CORTEX_PORT

3179

HTTP server port

CORTEX_SYNC_INTERVAL_MIN

30

Connector auto-sync interval in minutes

Example with custom config:

{
  "mcpServers": {
    "hive-memory": {
      "command": "hive-memory",
      "env": {
        "CORTEX_DATA_DIR": "/custom/path",
        "CORTEX_LOCAL_SYNC": "false"
      }
    }
  }
}

Local Context File (.cortex.md)

Hive Memory writes a .cortex.md file in each registered project directory. This file contains a snapshot of the project's current context — summary, recent session, next tasks, and cross-project insights. It's auto-generated and should be added to .gitignore.

To disable this feature, set CORTEX_LOCAL_SYNC=false.

Migration from v1/v2

Hive Memory v3 automatically migrates existing data:

  • Legacy knowledge/ files are migrated to hive direct entries on first startup, then renamed to knowledge.bak/

  • Existing project registrations (index.json, summary.json, sessions) are unchanged

  • Embedding data (vectors.json, embedding model cache) is no longer used and can be safely deleted

  • The @huggingface/transformers dependency has been removed — no more model downloads

  • Schema version is now tracked in the schema_meta table

No manual action needed — just update and restart.

Development

npm install          # Install dependencies
npm run build        # Build TypeScript
npm run dev          # Dev mode with auto-reload
npm run lint         # Lint with ESLint
npm run typecheck    # Type check
npm test             # Run tests
npm run test:coverage # Run tests with coverage report

License

MIT

A
license - permissive license
-
quality - not tested
B
maintenance

Maintenance

Maintainers
Response time
1dRelease cycle
2Releases (12mo)

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