mysql-mcp

📚 Full Documentation (Wiki) • Changelog • Security • Release Article

💎 Value Proposition

MySQL MCP is a production-ready integration engineered for AI agents. It minimizes LLM token consumption by up to 90% via sandboxed Code Mode. It scales reliably through built-in connection pooling. It secures database access using strict OAuth 2.1 validation.

Related MCP server: MCP MySQL Server

🎯 Core Benefits

🚀 Deploy in Minutes

Meet Prerequisites

• Node.js 24+

• MySQL 5.7, 8.0+, or 9.x (supported with limitations regarding Shell driver versions) server

• pnpm

Install the Server

NPM / PNPM (Recommended)

pnpm add -g @neverinfamous/mysql-mcp

Run the server:

mysql-mcp --transport stdio --mysql "mysql://user:password@localhost:3306/database"

Or use npx without installing:

npx @neverinfamous/mysql-mcp --transport stdio --mysql "mysql://user:password@localhost:3306/database"

Docker

Note on Namespaces: The Docker image uses the writenotenow namespace. The GitHub repo uses neverinfamous.

docker run -i --rm writenotenow/mysql-mcp:latest \
  --transport stdio \
  --mysql "mysql://user:password@host.docker.internal:3306/database"

From Source

git clone https://github.com/neverinfamous/mysql-mcp.git
cd mysql-mcp
pnpm install
pnpm run build
node dist/cli.js --transport stdio --mysql "mysql://user:password@localhost:3306/database"

⚡ Maximize Efficiency with Code Mode

Code Mode (mysql_execute_code) reduces token usage by 70-90%. It is included by default.

Code executes in a C++ V8 isolate sandbox. The server uses a physically separate V8 isolate via isolated-vm. The server enforces strict heap limits and synchronous termination. The server maps all mysql.* API calls through the boundary using native wrappers. This includes multiple layers of defense-in-depth and fleet-standard restrictions:

Enforce Engine-Level Restrictions

• ✅ Strict V8 Isolate Boundary — executes within a physically separate V8 isolate. It ensures native objects and prototypes cannot cross the boundary.

• ✅ Memory & CPU Constraints — enforced at the C++ level. This includes synchronous timeouts and strict heap limits.

• ✅ API Bindings via Reference — all MySQL API methods are securely injected into the isolate using ivm.Reference wrappers.

Validate Code Statically

• ✅ 29 blocked patterns — regex rules block require(), import(), eval(), process, and __proto__. They also block filesystem/network access and system commands.

• ✅ Unicode & Comment Sanitization — performs NFKC normalization and strips all comments before pattern validation to prevent regex evasion.

• ✅ 50KB code input limit — prevents payload-based resource exhaustion.

Protect the Runtime

• ✅ RPC Quotas — strict cap of 100 API calls per execution to prevent unbounded loops.

• ✅ Execution timeout — Enforces a 30s hard limit. It prevents resource exhaustion.

• ✅ Egress boundary enforcement — streaming JSON.stringify serialization aborts mid-flight when exceeding size caps (default 100KB).

• ✅ Rate limiting — 60 executions per minute per client. Distributed across deployments via Redis if REDIS_URL is provided, with graceful in-memory fallback.

• ✅ Readonly enforcement — when readonly: true, write methods return structured errors instead of executing.

• ✅ Audit logging — Logs every execution with UUID, metrics, and redacted code preview.

• ✅ Admin scope — Code Mode requires admin scope when OAuth is enabled.

• ✅ Full API access — Exposes all 28 tool groups via the mysql.* namespace.

⚡ Run Only Code Mode

Run with only Code Mode enabled. A single tool provides full capability access:

{
  "mcpServers": {
    "mysql-mcp": {
      "command": "node",
      "args": [
        "/path/to/mysql-mcp/dist/cli.js",
        "--transport",
        "stdio",
        "--tool-filter",
        "codemode"
      ],
      "env": {
        "MYSQL_HOST": "localhost",
        "MYSQL_PORT": "3306",
        "MYSQL_USER": "your_user",
        "MYSQL_PASSWORD": "your_password",
        "MYSQL_DATABASE": "your_database",
        "REDIS_URL": "redis://localhost:6379"
      }
    }
  }
}

This exposes just mysql_execute_code. Agents write JavaScript against the typed SDK. They compose queries and chain operations across 28 groups. They return exactly the needed data in one execution. This mirrors the Code Mode pattern. It ensures fixed token costs.

🌐 Connect Remotely via HTTP/SSE

Use the HTTP transport for remote access:

npx -y @neverinfamous/mysql-mcp \
  --transport http \
  --server-host 0.0.0.0 \
  --port 3000 \
  --mysql "mysql://user:pass@localhost:3306/db"

Docker:

docker run --rm -p 3000:3000 \
  writenotenow/mysql-mcp:latest \
  --transport http --server-host 0.0.0.0 --port 3000 --mysql "mysql://user:pass@host.docker.internal:3306/db"

The server supports two MCP transport protocols simultaneously. Both modern and legacy clients can connect:

Use Streamable HTTP (Recommended)

Modern protocol (MCP 2024-11-05) — single endpoint, session-based:

Rate Limit: HTTP transport is limited to 100 requests per minute per IP. Distributed across deployments via Redis if REDIS_URL is provided, with graceful in-memory fallback.

Sessions are managed via the Mcp-Session-Id header.

Run Statelessly

Use stateless deployments where sessions are not needed:

node dist/cli.js --transport http --server-host 0.0.0.0 --port 3000 --stateless --mysql "mysql://..."

In stateless mode: GET /mcp returns 405, DELETE /mcp returns 204, /sse and /messages return 404. Each POST /mcp creates a fresh transport.

Connect via Legacy SSE (Backward Compatibility)

Legacy protocol (MCP 2024-11-05) — for clients like Python mcp.client.sse:

Access Utility Endpoints

🔐 Secure Access with Authentication

mysql-mcp supports two authentication mechanisms for HTTP transport:

Authenticate Fast with Bearer Tokens (--auth-token)

Use lightweight authentication for development:

node dist/cli.js --transport http --server-host 0.0.0.0 --port 3000 --auth-token my-secret --mysql "mysql://..."

# Or via environment variable
export MCP_AUTH_TOKEN=my-secret
node dist/cli.js --transport http --server-host 0.0.0.0 --port 3000 --mysql "mysql://..."

Clients must include Authorization: Bearer my-secret on all requests. /health and / are exempt. Unauthenticated requests receive 401 with WWW-Authenticate: Bearer headers per RFC 6750.

Enforce Enterprise Security with OAuth 2.1

Use full OAuth 2.1 for production deployments:

node dist/cli.js \
  --transport http \
  --server-host 0.0.0.0 \
  --port 3000 \
  --mysql "mysql://user:pass@localhost:3306/db" \
  --oauth-enabled \
  --oauth-issuer http://localhost:8080/realms/mysql-mcp \
  --oauth-audience mysql-mcp-client

Additional flags: --oauth-jwks-uri <url> (auto-discovered if omitted), --oauth-clock-tolerance <seconds> (default: 60).

OAuth Scopes

Access control is managed through OAuth scopes:

RFC Compliance & Enterprise Security

This implementation follows full OAuth 2.1 for production multi-tenant deployments:

• ✅ RFC 9728 Protected Resource Metadata (/.well-known/oauth-protected-resource)

• ✅ RFC 8414 Authorization Server Discovery with caching

• ✅ RFC 7591 OAuth 2.1 Dynamic Client Registration

• ✅ JWT validation with JWKS support (TTL: 1 hour, configurable)

• ✅ MySQL-specific scopes: read, write, admin, full, db:{name}, schema:{name}, table:{schema}:{table}

• ✅ Per-tool scope enforcement via AsyncLocalStorage context threading

Note for Keycloak users: Add an Audience mapper to your client. This includes the correct aud claim. (Client → Client scopes → dedicated scope → Add mapper → Audience)

Cursor IDE / Claude Desktop

{
  "mcpServers": {
    "mysql-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@neverinfamous/mysql-mcp",
        "--transport",
        "stdio",
        "--mysql",
        "mysql://user:password@localhost:3306/database"
      ]
    }
  }
}

Using Environment Variables (Recommended)

{
  "mcpServers": {
    "mysql-mcp": {
      "command": "npx",
      "args": ["-y", "@neverinfamous/mysql-mcp", "--transport", "stdio"],
      "env": {
        "MYSQL_HOST": "localhost",
        "MYSQL_PORT": "3306",
        "MYSQL_USER": "your_user",
        "MYSQL_PASSWORD": "your_password",
        "MYSQL_DATABASE": "your_database",
        "MYSQL_XPORT": "33060"
      }
    }
  }
}

Note: MYSQL_XPORT (X Protocol port) defaults to 33060 if omitted. Only needed for mysqlsh_import_json and docstore tools. Set to your MySQL Router X Protocol port (e.g., 6448) when using InnoDB Cluster.

📖 See the Configuration Wiki for more configuration options.

🔗 Connect to Any Database

MySQL on Host Machine

If MySQL is installed directly on your computer (via installer, Homebrew, etc.):

[
  "--mysql",
  "mysql://user:password@host.docker.internal:3306/database"
]

MySQL in Another Docker Container

For local Docker setups, standardize on host.docker.internal. If you are using Docker Compose, you can use the service name mysql (or your specific container name) for docker-compose networking:

Create a network and run MySQL:

docker network create mynet
docker run -d --name mysql-db --network mynet -e MYSQL_ROOT_PASSWORD=pass mysql:8

Run MCP server on the same network:

docker run -i --rm --network mynet writenotenow/mysql-mcp:latest \
  --transport stdio --mysql "mysql://root:pass@mysql-db:3306/mysql"

Remote/Cloud MySQL (RDS, Cloud SQL, etc.)

Use the remote hostname directly:

[
  "--mysql",
  "mysql://user:password@your-instance.region.rds.amazonaws.com:3306/database"
]

Tip: For remote connections, ensure your MySQL server allows connections from Docker's IP range and that firewalls/security groups permit port 3306.

🛠️ Optimize Limits with Tool Filtering

What Can You Filter?

The --tool-filter argument accepts shortcuts, groups, or tool names — mix and match freely:

Shortcuts (Predefined Bundles)

Tool Groups (28 Available)

Note: Tool counts below do NOT include Code Mode (mysql_execute_code), which is automatically added to all groups.

Quick Start: Recommended IDE Configuration

Add one of these configurations to your IDE's MCP settings file (e.g., cline_mcp_settings.json, .cursor/mcp.json, or equivalent):

Option 1: Code Mode (Maximum Token Savings, 🌟 Recommended)

Best for: General MySQL database work with an AI agent. Exposes a single tool (mysql_execute_code) that provides access to its full toolset via a JavaScript sandbox.

{
  "mcpServers": {
    "mysql-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@neverinfamous/mysql-mcp",
        "--transport",
        "stdio",
        "--tool-filter",
        "codemode"
      ],
      "env": {
        "MYSQL_HOST": "localhost",
        "MYSQL_PORT": "3306",
        "MYSQL_USER": "mcp_user",
        "MYSQL_PASSWORD": "your_password",
        "MYSQL_DATABASE": "your_database"
      }
    }
  }
}

Option 2: Cluster (11 Tools for InnoDB Cluster Monitoring)

Best for: Monitoring InnoDB Cluster, Group Replication status, and cluster topology.

⚠️ Prerequisites:

• InnoDB Cluster must be configured and running with Group Replication enabled

• Connect to a cluster node directly (e.g., localhost:3307) — NOT a standalone MySQL instance

• Use cluster_admin or root user with appropriate privileges

• See MySQL Ecosystem Setup Guide for cluster setup instructions

{
  "mcpServers": {
    "mysql-mcp-cluster": {
      "command": "npx",
      "args": [
        "-y",
        "@neverinfamous/mysql-mcp",
        "--transport",
        "stdio",
        "--tool-filter",
        "cluster"
      ],
      "env": {
        "MYSQL_HOST": "localhost",
        "MYSQL_PORT": "3307",
        "MYSQL_USER": "cluster_admin",
        "MYSQL_PASSWORD": "cluster_password",
        "MYSQL_DATABASE": "mysql"
      }
    }
  }
}

Option 3: Ecosystem (41 Tools for InnoDB Cluster Deployments)

Best for: MySQL Router, ProxySQL, MySQL Shell, and InnoDB Cluster deployments.

⚠️ Prerequisites:

• InnoDB Cluster requires a running cluster. This enables Router REST API authentication.

• Router REST API uses self-signed HTTPS certificates. Set MYSQL_ROUTER_INSECURE=true to bypass verification.

• X Protocol: InnoDB Cluster includes the MySQL X Plugin by default. Set MYSQL_XPORT to the Router's X Protocol port (e.g., 6448) for mysqlsh_import_json and docstore tools

• See MySQL Ecosystem Setup Guide for detailed instructions

{
  "mcpServers": {
    "mysql-mcp-ecosystem": {
      "command": "npx",
      "args": [
        "-y",
        "@neverinfamous/mysql-mcp",
        "--transport",
        "stdio",
        "--tool-filter",
        "ecosystem"
      ],
      "env": {
        "MYSQL_HOST": "localhost",
        "MYSQL_PORT": "3307",
        "MYSQL_XPORT": "6448",
        "MYSQL_USER": "cluster_admin",
        "MYSQL_PASSWORD": "cluster_password",
        "MYSQL_DATABASE": "testdb",
        "MYSQL_ROUTER_URL": "https://localhost:8443",
        "MYSQL_ROUTER_USER": "rest_api",
        "MYSQL_ROUTER_PASSWORD": "router_password",
        "MYSQL_ROUTER_INSECURE": "true",
        "PROXYSQL_HOST": "localhost",
        "PROXYSQL_PORT": "6032",
        "PROXYSQL_USER": "radmin",
        "PROXYSQL_PASSWORD": "radmin",
        "MYSQLSH_PATH": "/usr/local/bin/mysqlsh"
      }
    }
  }
}

Customization Notes:

• Replace /path/to/mysql-mcp/ with your actual installation path

• Update credentials with your actual values

• For Windows: Use forward slashes (e.g., C:/mysql-mcp/dist/cli.js) or escape backslashes

• For Windows MySQL Shell: "MYSQLSH_PATH": "C:\\Program Files\\MySQL\\MySQL Shell 9.5\\bin\\mysqlsh.exe"

• Router Authentication: Router REST API authenticates against the InnoDB Cluster metadata. The cluster must be running for authentication to work.

• Cluster Resource: The mysql://cluster resource is only available when connected to an InnoDB Cluster node

Legacy Syntax (still supported): If you start with a negative filter (e.g., -ecosystem), it enables all tools first. It then subtracts the specified tools.

Syntax Reference

Custom Tool Selection

You can list individual tool names (without + prefix) to create a fully custom whitelist — only the tools you specify will be enabled:

The easiest way to filter is using whitelist mode. Simply specify the shortcut you want. Everything else is automatically disabled.

Architectural Rule: Tool filtering allows skipping the --mysql connection. Do this if only ecosystem tools (router, proxysql, shell) are used.

# Enable exactly 3 tools (whitelist mode)
--tool-filter "mysql_read_query,mysql_write_query,mysql_list_tables"

# Mix tools from different groups
--tool-filter "mysql_read_query,mysql_explain,mysql_json_extract"

# Combine with a shortcut or group
--tool-filter "starter,+mysql_spatial_distance,+mysql_json_diff"

This is useful for scripted or automated clients that need a minimal, precise set of capabilities.

📖 See the Tool Filtering Wiki for advanced examples.

🤖 Automate Workflows with AI Prompts

This server includes 19 intelligent prompts for guided workflows:

📊 Monitor Health with Resources

This server exposes 23 resources for database observability and telemetry:

🔧 Customize with Advanced Configuration

Tip: Configure the server using native JSON or YAML files via the --config <path> flag. Precedence follows: CLI Flags > Environment Variables > Config File > Defaults. See the server-config-example.json template at the root of the project for setup details.

For specialized setups, see these Wiki pages:

⚡ Boost Speed with Performance Tuning

The server caches schema metadata to reduce repeated queries during tool/resource invocations.

Tip: Lower METADATA_CACHE_TTL_MS for development (e.g., 5000), or increase it for production with stable schemas (e.g., 300000 = 5 min).

Built-in payload optimization: Many tools support optional summary: true for condensed responses. They also support limit parameters to cap result sizes. These are particularly useful for cluster status, monitoring, and sys schema tools where full responses can be large. See the code map for per-tool details.

CLI Options

| --transport, -t | — | Transport type: stdio, http, sse (default: stdio) | | --port, -p | MYSQLMCP_PORT | HTTP port for http/sse transports | | --server-host | MCP_HOST | Host to bind HTTP transport to (default: localhost) | | --mysql, -m | — | MySQL connection string | | --mysql-host | MYSQL_HOST | MySQL host | | --mysql-port | MYSQL_PORT | MySQL port | | --mysql-user | MYSQL_USER | MySQL username | | --mysql-password | MYSQL_PASSWORD | MySQL password | | --mysql-database | MYSQL_DATABASE | MySQL database name | | --pool-size | MYSQL_POOL_SIZE | Connection pool size (default: 10) | | --pool-min | MYSQL_POOL_MIN | Minimum connections in pool (default: 0) | | --pool-timeout | — | Connection acquire timeout in ms (default: 30000) | | --pool-queue-limit | — | Queue limit for waiting requests (default: 0) | | --tool-filter, -f | TOOL_FILTER | Tool filter string | | --name | — | Server name | | --auth-token | MCP_AUTH_TOKEN | Simple bearer token for HTTP authentication | | --stateless | — | Enable stateless HTTP mode (no sessions, no SSE) | | --trust-proxy | TRUST_PROXY | Trust X-Forwarded-For for client IP | | --enable-hsts | MCP_ENABLE_HSTS | Enable HTTP Strict Transport Security | | --metrics-export | MCP_METRICS_EXPORT | Enable prometheus metrics endpoint | | --log-level | LOG_LEVEL | Log level: debug, info, warn, error | | --allowed-io-roots | ALLOWED_IO_ROOTS | JSON array or comma list of allowed paths for HTTP/SSE and shell tools | | --audit-log | AUDIT_LOG_PATH | Path to the audit log file | | --audit-backup | — | Enable pre-mutation snapshots | | --audit-reads | — | Include read-scope tool calls in the audit log | | --audit-redact | — | Redact sensitive arguments in the audit log | | --audit-log-max-size | — | Max file size before rotation (bytes) | | --audit-backup-data | — | Include sample data in pre-mutation snapshots | | --audit-backup-max-size | — | Max table size in bytes for data capture | | --oauth-enabled, -o | OAUTH_ENABLED | Enable OAuth 2.1 authentication | | --oauth-issuer | OAUTH_ISSUER | Authorization server URL | | --oauth-audience | OAUTH_AUDIENCE | Expected token audience | | --oauth-jwks-uri | OAUTH_JWKS_URI | JWKS URI (auto-discovered) | | --oauth-clock-tolerance | OAUTH_CLOCK_TOLERANCE | Clock tolerance in seconds | | — | MYSQL_ROUTER_URL | MySQL Router URL | | — | MYSQL_ROUTER_USER | MySQL Router user | | — | MYSQL_ROUTER_PASSWORD | MySQL Router password | | — | MYSQL_ROUTER_INSECURE | Bypass Router TLS verification | | — | PROXYSQL_HOST | ProxySQL host | | — | PROXYSQL_PORT | ProxySQL port | | — | PROXYSQL_USER | ProxySQL user | | — | PROXYSQL_PASSWORD | ProxySQL password | | — | MYSQLSH_PATH | Path to MySQL Shell executable | | — | MYSQL_XPORT | MySQL X Protocol port (default 33060) | | — | CODEMODE_ISOLATION | Code mode isolation level | | — | CODE_MODE_MAX_RESULT_SIZE | Max Code Mode result payload in bytes | | — | METADATA_CACHE_TTL_MS | Cache TTL for schema metadata | | — | REDIS_URL | Redis connection URL (used for rate limiting) | | — | MCP_REQUEST_TIMEOUT | Global request timeout in ms (default 30000) | | — | MCP_HEADERS_TIMEOUT | Global headers timeout in ms (default 5000) |

Priority: When both --auth-token and --oauth-enabled are set, OAuth 2.1 takes precedence. If neither is configured, the server warns and runs without authentication.

Scopes

📖 See the OAuth Wiki for Keycloak setup and detailed configuration.

💻 Extend and Contribute

See From Source above for setup. After cloning:

pnpm run check  # Run lint, typecheck, unit tests, and E2E tests

MCP Inspector

Use MCP Inspector to visually test and debug mysql-mcp:

Build the server first:

pnpm run build

Launch Inspector with mysql-mcp:

npx @modelcontextprotocol/inspector node dist/cli.js \
  --transport stdio \
  --mysql mysql://user:password@localhost:3306/database

Open http://localhost:5173 to browse all 241 tools, 23 resources, and 19 prompts interactively.

CLI mode for scripting:

List all tools:

npx @modelcontextprotocol/inspector --cli node dist/cli.js \
  --transport stdio --mysql mysql://... \
  --method tools/list

Call a specific tool:

npx @modelcontextprotocol/inspector --cli node dist/cli.js \
  --transport stdio --mysql mysql://... \
  --method tools/call --tool-name mysql_list_tables

📖 See the MCP Inspector Wiki for detailed usage.

Unit Testing

The project maintains high test coverage (~90%) using Vitest.

pnpm test

Run coverage report:

pnpm run test:coverage

Test Infrastructure:

• Centralized mock factories in src/__tests__/mocks/

• All 111 test files use shared mocks for consistency

• Tests run without database connection (fully mocked)

Benchmarking

The project includes a performance benchmarking suite to track the efficiency of critical paths like Code Mode sandbox initialization, tool filtering, and URI routing.

pnpm run bench

Contributing

Contributions are welcome! Please read our Contributing Guidelines before submitting a pull request.

Security

For security concerns, please see our Security Policy.

⚠️ Never commit credentials - Store secrets in .env (gitignored)

License

This project is licensed under the MIT License - see the LICENSE file for details.

Code of Conduct

Please read our Code of Conduct before participating in this project.