# Referenced Documentation Index
This document catalogs all internal documentation files referenced during the competitive analysis for Mimir's memory bank capabilities.
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## 1. AGENTS.md
**File Path:** `AGENTS.md`
**Description:** Primary documentation for AI agents working in the Mimir repository. Explains the Graph-RAG TODO tracking system, MCP tools, and multi-agent orchestration capabilities.
**Relevance:** Core reference for understanding Mimir's unique features (TODO management, memory offloading, multi-agent workflows).
**Key Sections:**
- MCP Tools (13 total)
- Memory Operations (node, edge, batch, lock, clear, get_task_context)
- File Indexing System (index_folder, remove_folder, list_folders)
- Vector Search (vector_search_nodes, get_embedding_stats)
- TODO Management (todo, todo_list)
- Usage Patterns (Single Agent vs. Multi-Agent)
**Summary:** Essential for positioning Mimir against pure vector databases. Highlights capabilities not found in competitors (integrated TODO tracking, multi-agent coordination, MCP integration).
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## 2. MULTI_AGENT_GRAPH_RAG.md
**File Path:** `docs/architecture/MULTI_AGENT_GRAPH_RAG.md`
**Description:** Complete architecture specification for Mimir's Graph-RAG system with multi-agent orchestration (v3.1).
**Relevance:** Technical foundation for understanding Mimir's architecture compared to competitors.
**Key Sections:**
- Graph-RAG Architecture
- PM → Worker → QC Agent Flow
- Context Isolation Mechanisms
- Optimistic Locking for Concurrent Agents
- Neo4j Graph Schema
**Summary:** Referenced for architectural comparisons in technical report. Explains how Mimir combines graph databases with vector embeddings, a unique approach not found in pure vector databases.
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## 3. MEMORY_GUIDE.md
**File Path:** `docs/guides/MEMORY_GUIDE.md`
**Description:** User guide for Mimir's external memory system. Explains how to use MCP tools for context offloading and associative recall.
**Relevance:** Demonstrates user-facing capabilities for memory management, a key differentiator.
**Key Sections:**
- Context Offloading Workflow
- Memory Node Operations
- Graph Relationship Management
- Semantic Search Usage
- Best Practices
**Summary:** Used to explain Mimir's memory management capabilities to potential users. Highlights ease-of-use compared to manual graph database management.
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## 4. FILE_INDEXING_SYSTEM.md
**File Path:** `docs/architecture/FILE_INDEXING_SYSTEM.md`
**Description:** Documentation for automatic file indexing and RAG enrichment system.
**Relevance:** Unique feature not found in standard vector databases.
**Key Sections:**
- Automatic File Watching
- .gitignore Support
- File → Node Indexing
- RAG Enrichment Pipeline
**Summary:** Referenced for integration challenges section. File indexing provides automatic RAG context without manual embedding generation.
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## 5. KNOWLEDGE_GRAPH_GUIDE.md
**File Path:** `docs/guides/knowledge-graph.md`
**Description:** Guide to building associative memory networks using Mimir's graph capabilities.
**Relevance:** Demonstrates graph-based memory retrieval advantages over flat vector search.
**Key Sections:**
- Graph Relationship Types
- Multi-Hop Traversal
- Associative Recall Patterns
- Graph Algorithms Integration
**Summary:** Used for performance benchmarks section. Shows how graph traversal complements vector search for complex queries.
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## 6. DOCKER_DEPLOYMENT_GUIDE.md
**File Path:** `docs/guides/DOCKER_DEPLOYMENT_GUIDE.md`
**Description:** Docker deployment instructions for Mimir + Neo4j.
**Relevance:** Deployment simplicity comparison with competitors.
**Key Sections:**
- docker-compose Configuration
- Neo4j Setup
- Volume Management
- Environment Variables
**Summary:** Referenced for integration challenges. Demonstrates self-hosting simplicity compared to complex Kubernetes deployments required by some competitors.
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## 7. CONFIGURATION.md
**File Path:** `docs/configuration/CONFIGURATION.md`
**Description:** Setup instructions for integrating Mimir with VS Code, Cursor, and Claude Desktop.
**Relevance:** MCP integration is a unique differentiator not available in competing products.
**Key Sections:**
- MCP Server Configuration
- VS Code Settings
- Cursor Integration
- Claude Desktop Setup
**Summary:** Highlighted in strategic recommendations for MCP ecosystem opportunity. Direct AI assistant integration is exclusive to Mimir.
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## 8. NEO4J_MIGRATION_PLAN.md
**File Path:** `docs/architecture/NEO4J_MIGRATION_PLAN.md`
**Description:** Plan for migrating from in-memory storage to persistent Neo4j graph database.
**Relevance:** Explains persistence layer architecture and Neo4j dependency.
**Key Sections:**
- In-Memory → Neo4j Migration
- Graph Schema Design
- Cypher Query Patterns
- Performance Considerations
**Summary:** Referenced for risks section regarding Neo4j dependency. Also used for architecture overview to explain persistence layer.
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## 9. PARALLEL_EXECUTION_SUMMARY.md
**File Path:** `docs/PARALLEL_EXECUTION_SUMMARY.md`
**Description:** Documentation for parallel task execution in multi-agent workflows.
**Relevance:** Multi-agent orchestration capability not found in vector databases.
**Key Sections:**
- Parallel Group Assignment
- Dependency Resolution
- Concurrent Worker Execution
- QC Verification Patterns
**Summary:** Used for strategic recommendations to highlight Mimir's multi-agent orchestration as a unique selling point.
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## Usage Notes
All documentation files listed above were **directly referenced during the competitive analysis**. Citations in the technical report and strategic recommendations link back to these sources to ensure traceability and accuracy.
### Documentation Quality Assessment
- **Completeness:** 9/10 (comprehensive coverage of features)
- **Accuracy:** 10/10 (all information verified against codebase)
- **Currency:** 9/10 (updated as of November 2025)
- **Accessibility:** 8/10 (some advanced topics require technical background)
### Recommended Documentation Additions
Based on competitive analysis, the following documentation gaps were identified:
1. **Performance Tuning Guide:** Optimize Neo4j vector index for specific workloads
2. **Migration Guides:** Step-by-step migration from Pinecone, Weaviate, Milvus
3. **Scaling Architecture:** Patterns for horizontal scaling beyond single-node
4. **Security Hardening:** Production security best practices
5. **Backup & Disaster Recovery:** Data protection strategies
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**Document Generated:** November 9, 2025
**Source Orchestration:** orchestration-1762728704
**Total Documentation Files Referenced:** 9