Protein MCP Server

# Python-generated files __pycache__/ *.py[oc] build/ dist/ wheels/ *.egg-info # Virtual environments .venv .env .ENV # IDE and editor files .vscode/ .idea/ *.swp *.swo *~ # Type checking .mypy_cache/ # Testing .coverage htmlcov/ .pytest_cache/ # Logs *.log logs/ # Temporary files *.tmp *.temp *.bak *.backup formatting_diff.txt # OS generated files .DS_Store Thumbs.db # Package managers node_modules/ npm-debug.log* yarn-debug.log* yarn-error.log* # MCP specific .mcp-debug/ mcp-debug.log # Protein data files (optional, can be large) *.pdb *.cif *.mmcif *.ent *.gz *.bz2 *.zip data/ downloads/ # Runtime files runtime/ cache/ tmp/ # Project specific uv.lock