TogoMCP

# This is a template for the RDF-Config file. endpoint: # The "endpoint" tag is fixed. # Replace with valid URI for SPARQL endpoint. - https://rdfportal.org/pubchem/sparql - graph: # The "graph" tag is fixed. # Replace with valid URIs for RDF graphs. - http://rdf.example.org/graph1 - http://rdf.something.org/graph2 metadata: # In this section, all the tags are fixed. Don't change them. # Replace with valid descriptions title: Example RDF description: Example RDF is a collection of some biological data tags: [Protein, Gene, Pathway] # Relevant biological context of this database provider: DBCLS # Data provider. Use "Unknown" if unavailable. creators: - name: Tem Plate # Name of the creator of this file. Use "Unknown" if unavailable. affiliation: The Earth # Affiliation of the creator. Use "Unknown" if unavailable. version: 0.0.1 issued: 2025-09-16 # Use `today` if not specified. licenses: - https://creativecommons.org/licenses/by/4.0/ prefix: # The "prefix" tag is fixed. Don't change it. # Replace with relevant prefixes and URIs that are actually used in the database. rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> rdfs: <http://www.w3.org/2000/01/rdf-schema#> faldo: <http://biohackathon.org/resource/faldo#> obo: <http://purl.obolibrary.org/obo/> so: <http://purl.obolibrary.org/obo/so#> dc: <http://purl.org/dc/elements/1.1/> dcterms: <http://purl.org/dc/terms/> owl: <http://www.w3.org/2002/07/owl#> ensg: <http://rdf.ebi.ac.uk/resource/ensembl/> terms: <http://rdf.ebi.ac.uk/terms/ensembl/> ense: <http://rdf.ebi.ac.uk/resource/ensembl.exon/> ex: <http://example.org/resource/> model: # The "model" tag is fixed. Don't change it. # In the following, add entity examples, sufficiently many to make biologically relevant SPARQL queries. # Except for the variable type (with property "a"), there is always an object. # The examples (e.g., ex:exampl1 and "example2") must be real data. Do not make fake URIs or literals. Check the database for their existance. - VarName1 ex:example1: # Replace with meaningful variable name (CamelCase) for "VarName1". Replace "ex:example1" with an EXISTING URI. - a: ex:Class1 # ex:Class1 must be the class of ex:example1 (when available). - ex:prop1: # Replace with appropriate property ex:example1 may have. - var_name_2: "example2" # Replace with meaningful variable name (snake_case) for "VarName2". "example2" must be an existing literal. # If ex:example2 has nodes under it, DO NOT nest any further. If there are nodes under this, make separate items for each at the same level as VarName1. - ex:prop2: # Replace with appropriate property name ex:example1 may have. - var_name_3: ex:example3 # Replace with meaningful variable name (snake_case) for "VarName3" and real example for "ex:example3". - VarName4 ex:example4: # Replace with meaningful variable name (CamelCase) for "VarName4". "ex:example4" must be an existing URI. - a: ex:Class2 # ex:Class2 must be the class of ex:example4 (when available). - ex:prop3: # Replace with appropriate property ex:example4 may have. - var_name_5: ex:example5 # Replace with meaningful variable name (snake_case) for "VarName5". "ex:example5" must be an existing URI or literal. - ex:prop4*: # The "*" at the end indicates 0 or more properties. - var_name_6: ex:example6 # Replace with meaningful variable name (snake_case) for "VarName6". "ex:example6" must be an existing URI or literal." - rdfs:label: - var_name_7: "some label" - VarName8 ex:example8: # Replace with meaningful variable name for "VarName8". "ex:example8" must be an existing URI. - a: ex:Class3 # ex:Class3 must be the class of ex:example8 (when available). - ex:prop5+: # The "+" at the end indicates 1 or more properties. - var_name_9: ex:example9