NCBI Entrez MCP Server

#!/usr/bin/env node /** * Test script to verify field validation fix * Tests that PubMed field abbreviations like [tiab] and [dp] are now accepted */ import { EntrezSDK } from './sdk/javascript/entrez-sdk.js'; const SERVER_URL = 'http://localhost:8787'; async function testFieldValidationFix() { console.log('🧪 Testing Field Validation Fix\n'); const sdk = new EntrezSDK(SERVER_URL); try { // Test 1: [tiab] field tag (Title/Abstract) console.log('Test 1: Query with [tiab] field tag'); console.log('Query: "CRISPR gene editing[tiab] AND 2024[dp]"\n'); const result1 = await sdk.search( 'pubmed', 'CRISPR gene editing[tiab] AND 2024[dp]', { retmax: 5 } ); if (result1.count > 0) { console.log('✅ PASS: [tiab] and [dp] tags accepted'); console.log(` Found ${result1.count} articles`); console.log(` Query translation: ${result1.queryTranslation?.substring(0, 100)}...\n`); } else { console.log('⚠️ WARNING: Query accepted but no results\n'); } // Test 2: [au] field tag (Author) console.log('Test 2: Query with [au] field tag'); console.log('Query: "Smith J[au] AND cancer[ti]"\n'); const result2 = await sdk.search( 'pubmed', 'Smith J[au] AND cancer[ti]', { retmax: 5 } ); if (result2.count > 0) { console.log('✅ PASS: [au] and [ti] tags accepted'); console.log(` Found ${result2.count} articles\n`); } else { console.log('⚠️ WARNING: Query accepted but no results\n'); } // Test 3: [mh] field tag (MeSH) console.log('Test 3: Query with [mh] field tag'); console.log('Query: "Neoplasms[mh]"\n'); const result3 = await sdk.search( 'pubmed', 'Neoplasms[mh]', { retmax: 5 } ); if (result3.count > 0) { console.log('✅ PASS: [mh] tag accepted'); console.log(` Found ${result3.count} articles\n`); } else { console.log('⚠️ WARNING: Query accepted but no results\n'); } console.log('✅ All field validation tests passed!'); console.log('\n📝 Summary:'); console.log(' - Field abbreviations ([tiab], [dp], [au], [ti], [mh]) now work correctly'); console.log(' - NCBI handles field validation (no false positives)'); } catch (error) { console.error('❌ FAIL: Test failed with error:'); console.error(` ${error.message}`); process.exit(1); } finally { await sdk.close(); } } // Run test testFieldValidationFix().catch(err => { console.error('Unhandled error:', err); process.exit(1); });