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OBIS — Marine Species Occurrence Search

obis.marine.occurrence_search
Read-onlyIdempotent

Search 100M+ marine species occurrence records in the Ocean Biodiversity Information System (OBIS). Filter by scientific name, WoRMS AphiaID, geographic coordinates with radius, or year range. Each record includes GPS coordinates, observation year, depth, sea-surface temperature, dataset source, and full taxonomic classification (kingdom→species). Covers all ocean environments: pelagic, benthic, coastal, deep-sea. Source: OBIS — free, CC BY 4.0, no auth required.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
latNoCenter latitude for geographic search (decimal degrees, -90 to 90). Requires lon and radius.
lonNoCenter longitude for geographic search (decimal degrees, -180 to 180). Requires lat and radius.
limitNoNumber of occurrence records to return (1-100, default 10).
radiusNoSearch radius in kilometers around the lat/lon center point. Requires lat and lon.
maxyearNoLatest observation year to include (e.g. 2024). Pairs with minyear.
minyearNoEarliest observation year to include (e.g. 2000). Pairs with maxyear.
taxonidNoWoRMS AphiaID (numeric taxon identifier). Use instead of or alongside scientificname for precise lookups.
scientificnameNoScientific name of the marine species to search (e.g. "Abra alba", "Gadus morhua", "Thunnus thynnus"). Supports partial matching.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
errorNoPresent only when the call failed. Includes error code, message, request_id, and any provider-specific extras.
resultNoTool response payload. Shape varies per tool — consult the tool description and inputSchema. May be an object, array, string, or number depending on the upstream provider response.

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

A4.5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare read-only, idempotent, and open-world behavior. The description adds valuable context beyond that: record fields, coverage of ocean environments, the CC BY 4.0 license, and the fact that no authentication is required. This enriches the behavioral understanding without contradicting annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is compact and front-loaded with the core functionality, followed by filters, record contents, coverage, and data provenance. Every sentence carries useful information without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a search tool with an output schema, the description covers all necessary context: data source, licensing, auth requirements, geographic scope, and what fields are returned. Nothing essential for calling the tool correctly is missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, and the description summarizes filters (scientific name, AphiaID, coordinates with radius, year range) that directly map to the schema parameters. It adds no extra parameter detail beyond what the schema already provides, so the baseline of 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb ('Search'), a clear resource ('100M+ marine species occurrence records in OBIS'), and enumerates the main filtering dimensions. It distinguishes itself from related biodiversity tools by naming the dataset and the scope of the data.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides clear context on what the tool does and which filters are available, but does not explicitly mention when to prefer it over sibling tools (e.g., gbif, inaturalist). The coverage and licensing details help an agent decide, yet no exclusions or alternatives are named.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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