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pubmed_search

Read-onlyIdempotent

Search PubMed biomedical literature via NCBI E-utilities (free; optional NCBI_API_KEY raises limits). Resolves matching PMIDs and then fetches article summaries. Use for biomedical/clinical citations; use arxiv_search for preprints and europepmc_search for a European mirror with full-text links.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
limitNoMax articles, default 10, max 50
queryYesPubMed query, e.g. CRISPR AND cancer

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
dataYesSource payload; fields vary per tool
sourceYesHuman-readable upstream source name
retrievedAtYesISO-8601 timestamp of retrieval

Schema Changelog

Changes observed during successful MCP inspections.

  1. Added

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnly/openWorld/idempotent, so the safety profile is covered. The description adds real operational context beyond that: the service is free, an optional NCBI_API_KEY raises rate limits, and the call performs a resolve-then-fetch sequence. It stops short of stating concrete rate-limit thresholds or failure behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences, zero filler, and the purpose is front-loaded before the routing guidance. Every clause carries information an agent needs.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a two-parameter read-only search with full schema coverage and an output schema, nothing an agent needs to invoke it correctly is missing: purpose, cost/auth model, execution shape, and sibling routing are all present.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so both parameters (query syntax example, limit default 10 / max 50) are fully documented in the schema. The description adds no parameter-level detail, so the baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb and resource ('Search PubMed biomedical literature via NCBI E-utilities') and discloses the two-stage mechanism (resolve PMIDs, then fetch summaries). It explicitly differentiates itself from the two most confusable siblings, arxiv_search and europepmc_search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Gives explicit when-to-use ('biomedical/clinical citations') and names the alternatives with the condition that selects each: arxiv_search for preprints, europepmc_search for a European mirror with full-text links. Routing is unambiguous.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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