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Opentreeoflife

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

TDQS

A4.9/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, openWorldHint, idempotentHint, and non-destructive. Description adds implementation details: BGE-base-en embeddings, cosine similarity, 500-char overlapping windows, 200K char cap with truncation and flag. No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Perfectly concise: 4 sentences covering purpose, usage, pairing, and technical details. No wasted words. Front-loaded with core functionality.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

No output schema, but description explains return: 'top-N passages with character offsets and similarity scores'. Covers cap and truncation. Sufficient for an agent to understand what to expect.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with good descriptions. Description adds context: 'Pass the text you already pulled' and explains the query parameter's natural-language style. Provides default for limit (5). Adds value beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clear verb-resource pairing: 'Semantic search INSIDE a fetched record'. Differentiates from siblings by explicitly mentioning the use case of querying within a large fetched record, and pairs with ask_pipeworx_grounded.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use: 'Use when the record is too big to cram into the prompt'. Provides an alternative: 'Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document'.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.7/5.0
Disambiguation3/5

Many tools have clear distinct purposes, but ask_pipeworx, ask_pipeworx_beta, ask_pipeworx_grounded, and deep_research have overlapping functionality with subtle differences, causing potential confusion. Overall, most tools are distinguishable.

Naming Consistency2/5

Tool names use a mix of patterns: some follow verb_noun (validate_claim, resolve_entity), others are compound nouns (polymarket_arbitrage, ai_visibility_check), and some are plain verbs (recall, forget). Inconsistent style and length reduce predictability.

Tool Count3/5

At 34 tools, the count is on the high side for a typical server, but it might be manageable if the scope were broad. However, the server name 'Opentreeoflife' suggests a narrow biological focus, making the large count feel mismatched and excessive.

Completeness1/5

For a server named after a tree-of-life database, only three tools (match_names, common_ancestor, taxon_info) are relevant. Missing fundamental operations like listing children, searching taxa, or retrieving phylogenetic trees leaves the domain severely incomplete.

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