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Mydisease

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observed

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Adds rich behavioral details beyond annotations: BGE-base-en embeddings, cosine similarity, 500-char overlapping windows, 200K char cap with truncation flag, and passage offsets. No contradiction with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single, efficient paragraph with front-loaded purpose. Every sentence adds value, no fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers all aspects: purpose, usage, behavior, parameters, and return format (passages with offsets and scores) despite no output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, but description adds default value and range for 'limit' (1-20, default 5) and provides query examples, adding value beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states 'Semantic search INSIDE a fetched record' with specific verb and resource. Distinguishes itself from alternatives like ask_pipeworx_grounded and implies use when record is too large.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'Use when the record is too big to cram into the prompt' and mentions pairing with ask_pipeworx_grounded. Does not explicitly list when not to use, but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

All Mydisease toolsInspect
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TDQS

A3.9/5.0
Disambiguation2/5

Multiple research/query entry points overlap heavily: ask_pipeworx and ask_pipeworx_beta are currently identical, ask_pipeworx_grounded and deep_research sit on the same routing core, and validate_claim/bet_research/entity_profile all wrap lookup-and-analyze behavior. The detailed descriptions help within specialized clusters, but the central ask_pipeworx family alone creates real selection ambiguity.

Naming Consistency3/5

All names are lower_snake_case and several families are consistent (ask_pipeworx_*, polymarket_*, remember/recall/forget), but the overall set mixes bare verbs, nouns, and verb_noun composites with no global pattern (disease, metadata, query, entity_profile, generate_llms_txt, validate_claim). It is readable but not predictable across the full 34-tool surface.

Tool Count2/5

34 tools is over the 25+ threshold and the set bundles several distinct domains—disease ontology, Pipeworx data access, prediction markets, AI visibility, npm scanning, memory, and subscriptions—into one server. Each subfamily may be justified, but the combined surface is heavy and makes tool selection harder than the underlying tasks require.

Completeness4/5

The disease domain has query/disease/metadata for search-and-fetch read coverage, and the broader research side has lookup, grounded verification, deep research, entity profiles, comparisons, subscriptions, and memory lifecycle tools. Minor gaps exist (no direct tool to fetch pipeworx:// citation URIs, no disease browsing/pagination), but these are workable rather than blocking.

Resources