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Hgnc

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

TDQS

A4.6/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Goes well beyond annotations by describing embedding model (BGE-base-en), chunking (500-char overlapping windows), truncation at 200K chars with flag, and return fields (offsets, similarity scores). Discloses no destructive behavior consistent with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single paragraph with high information density; front-loaded with core functionality. Slightly dense but every sentence serves a purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Fully specifies return values (top-N passages with offsets and scores), explains truncation behavior, and paired with annotations provides a complete picture for agent invocation without output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 100% description coverage; description adds value through natural-language query examples and explains internal processing (chunking, embedding) that aids understanding of how text and query interact.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool performs semantic search inside a fetched record, using specific verbs and resource, and differentiates from sibling tools by referencing ask_pipeworx_grounded.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly advises use when records are too large for prompts and mentions pairing with ask_pipeworx_grounded; lacks explicit 'when not to use' but provides strong contextual guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.8/5.0
Disambiguation3/5

Tools are mostly distinct but several ask_pipeworx variants and research tools overlap in purpose, which could lead to agent confusion. The presence of memory and subscription tools adds unrelated functionality.

Naming Consistency2/5

Naming is inconsistent, mixing snake_case with varying verb patterns (ask, get, search, scan, etc.) and no clear convention. Some tools have descriptive phrases (e.g., generate_llms_txt) further breaking consistency.

Tool Count2/5

34 tools is excessive for a coherent server, covering too many disparate domains (genes, data queries, betting, memory) without clear focus. A gene server should have far fewer tools.

Completeness3/5

Gene-related tools are complete for basic queries (search, get, resolve), but the server's main purpose (HGNC) is overshadowed by many unrelated Pipeworx tools, creating a mismatch. The overall surface is broad but lacks domain focus.

Resources