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Plate map (6- to 384-well)

plate_map
Read-onlyIdempotent

Use when someone lays out a multiwell plate (ELISA, qPCR, cell or compound assays). Lays out a 6, 12, 24, 48, 96 or 384-well plate: standards, samples, controls and blanks with replicates, filled by row or column, optionally leaving edge wells empty and keeping replicate sets together. Returns a grid with a key and a well-by-well list.

Input Schema

NameRequiredDescriptionDefault
blanksNoNumber of blank wells, placed last.
formatNo
samplesNoUnique sample names, in placement order.
controlsNoControl names (e.g. 'NTC', 'Positive control'), placed after samples.
plateNameNo
standardsNoOptional standard curve, placed first.
avoidEdgesNoLeave the outer wells empty to reduce edge effects.
replicatesNoReplicates per sample.
fillDirectionNoFill across rows (A1, A2, …) or down columns (A1, B1, …).row
controlReplicatesNoDefaults to the sample replicates.
keepReplicatesTogetherNoStart a new row or column instead of splitting a replicate set.

Output Schema

NameRequiredDescriptionDefault
cardNoWhat the Verbex card draws; same values as the notebook entry.
toolYes
resultNo
humanUrlNo
warningsNo
safetyNotesNo
toolVersionNo
notebookEntryNoMarkdown entry to paste into a lab notebook.
validationErrorsNo

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

A4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, destructiveHint=false and openWorldHint=false, so the safety profile is covered. The description adds useful behavioral context beyond that: the supported plate formats, composition with standards/samples/controls/blanks, row- or column-filling, edge-well avoidance, replicate grouping, and the shape of the returned grid.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences, front-loaded with the usage condition and followed by the operation and return shape. Every clause earns its place and there is no preamble or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For an 11-parameter tool with a nested standards object and an output schema, the description covers the purpose, the layout rules and the return format succinctly. It does not discuss limits such as maximum replicate counts or what happens when the plate is too small, but those are largely schema-enforced or output-schema-covered.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is high at 82%, so the schema already documents the key parameters such as fillDirection, avoidEdges and keepReplicatesTogether. The description reinforces the meaning of these options in prose but does not add much syntax or constraint detail beyond what the schema already provides.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb and resource: laying out standards, samples, controls and blanks with replicates on 6- to 384-well plates. It is clear enough to distinguish the tool from general liquid-handling or dilution tools, though it never explicitly contrasts with siblings such as serial_dilution or eln_template.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The opening 'Use when someone lays out a multiwell plate (ELISA, qPCR, cell or compound assays)' gives a concrete usage context. It does not state when not to use it or name an alternative tool for adjacent tasks, so the guidance is strong but not complete.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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