covams_spectral_quality
Assess quality of an MS/MS spectrum (grade A through D).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| peaks | Yes | ||
| api_key | No | ||
| precursor_mz | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |
Assess quality of an MS/MS spectrum (grade A through D).
| Name | Required | Description | Default |
|---|---|---|---|
| peaks | Yes | ||
| api_key | No | ||
| precursor_mz | No |
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |
Changes observed during successful MCP inspections.
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description carries the full burden. It does disclose that the output is a letter grade A–D, which is genuinely useful behavioral information, but says nothing about authentication expectations (an api_key parameter exists), the grading criteria at each boundary, or determinism. That leaves substantive behavioral gaps for a scoring tool.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
A single front-loaded sentence with no padding or repetition. It is efficient, though its brevity contributes to the gaps scored elsewhere.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Because an output schema exists, the description need not explain return values, but the tool still has three completely undocumented parameters and no annotation coverage. One sentence is not sufficient context for correctly invoking a scoring endpoint.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema description coverage is 0% and the description adds no parameter information at all. It never explains the expected shape of 'peaks' (e.g., m/z–intensity pairs), what precursor_mz contributes to the grade, or how api_key is used, so all three parameters remain undocumented.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
States a specific verb and resource ('Assess quality of an MS/MS spectrum') and names the output form (grade A through D), which clearly separates it from siblings like covams_identify or covams_process_spectrum. It does not explicitly name or rule out any sibling, but the purpose is unambiguous.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
There is no when-to-use or when-not-to-use guidance and no mention of alternatives such as covams_process_spectrum or covams_fragment_annotate. Usage is only implied by the fact that a spectrum is required as input.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
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