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CovaSyn Chemistry Tools

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covabio_align

Pairwise sequence alignment using BioPython. Supports BLOSUM62, BLOSUM45, BLOSUM80 substitution matrices. Returns alignment score, identity percentage, aligned sequences, and gap statistics.

Parameters:
  seq1: First amino acid sequence.
  seq2: Second amino acid sequence.
  matrix: Scoring matrix — "BLOSUM62" (default), "BLOSUM45", "BLOSUM80".

Returns: {score, identity_pct, aligned_seq1, aligned_seq2, n_gaps}

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
seq1Yes
seq2Yes
matrixNoBLOSUM62
api_keyNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

Score is being calculated.

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