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CovaSyn Chemistry Tools

covabasic_standardize

Standardize a SMILES string.

mode="basic" — salt stripping, neutralization, canonical tautomer mode="enhanced" — + charge-parent extraction, metal disconnection, stereo normalization

Input Schema

NameRequiredDescriptionDefault
modeNobasic
smilesYes
api_keyNo

Output Schema

NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

A3.6/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full behavioral burden. It does disclose the exact operations performed per mode, which is real value, but it says nothing about the api_key auth requirement, whether the original input is preserved, error behavior, or cost/rate limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two lines of tightly front-loaded text with no filler; the mode breakdown is laid out so an agent can scan it immediately.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return values need not be described, and the transformation semantics are well covered. The remaining gaps are the undocumented api_key credential parameter and the absence of any routing hint relative to sibling standardization tools.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, and the schema does not even declare the allowed values for mode, so the description is the only source defining basic vs enhanced — that is genuinely additive. It leaves api_key and smiles entirely unexplained, though smiles is self-evident.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb (standardize) and resource (SMILES string), and the mode breakdown enumerates the concrete transformations applied, which meaningfully distinguishes it from generic siblings like covabasic_convert or covabasic_depict. It never names the closer sibling covabasic_canonicalize or covabasic_tautomers, so the differentiation is partial rather than complete.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Listing what each mode does implies when to pick basic (light cleanup) versus enhanced (aggressive normalization), which is useful mode-selection guidance. However there is no explicit statement of when to use this tool instead of the many sibling normalization tools, and no exclusions or prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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