Skip to main content
Glama

CovaSyn Chemistry Tools

covabasic_scaffold_analysis

Murcko scaffold decomposition: core ring framework, side chains, generic scaffold, ring systems, linkers. Useful for series analysis and SAR.

Input Schema

NameRequiredDescriptionDefault
smilesYes
api_keyNo

Output Schema

NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

B3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full behavioral burden, yet it discloses nothing about determinism, permissions, input failure behavior, or output shape. It enumerates decomposition components but not how the tool behaves or when it might fail.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two tight sentences, front-loaded with the technique and its decomposition outputs, with no filler. Efficient and well-structured, though the trailing benefit clause is fairly generic.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists so return values need not be explained, and the decomposition list is helpful context. However, with 0% parameter coverage and no annotations, the description is a feature list that leaves input meaning and behavioral expectations unaddressed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0% and the description says nothing about either parameter. The required 'smiles' input is only inferable from domain convention, and 'api_key' is entirely undocumented, so the description fails to compensate for the coverage gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific technique (Murcko scaffold decomposition) and enumerates the concrete outputs it produces (core ring framework, side chains, generic scaffold, ring systems, linkers). An agent can clearly tell what the tool does, though it does not explicitly contrast itself with siblings like covabasic_brics or covabasic_substructure.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It offers a usage context ('Useful for series analysis and SAR') but gives no when-not guidance or named alternatives among the many similar covabasic_* decomposition tools. Usage is implied rather than specified.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Try in Browser

Glama MCP Gateway

Add one secure layer between your agents and this server.