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CovaSyn Chemistry Tools

covabasic_pubchem

Query PubChem database. NETWORK REQUIRED.

action options:
  "lookup"     — find compound by name, CAS, SMILES, or InChIKey. Returns CID, IUPAC name, InChI, MW, XLogP, TPSA.
  "smiles"     — resolve a compound name or CAS to canonical SMILES.
  "properties" — fetch computed properties for a PubChem CID (pass CID as query).
  "similarity" — find similar compounds by Tanimoto (pass SMILES as query, set threshold 0-1).

Input Schema

NameRequiredDescriptionDefault
queryYes
actionNolookup
api_keyNo
thresholdNo
query_typeNoname
max_resultsNo

Output Schema

NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

B3.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It usefully discloses "NETWORK REQUIRED", which flags latency/connectivity behavior, and describes per-action return contents. But it omits auth requirements (an api_key parameter exists), rate limits, and error behavior for a networked external-API tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Front-loads the purpose and network caveat, then presents the actions as a scannable aligned list — efficient and easy to parse. Minor slack in that the output contents are listed redundantly for actions whose returns are covered by the output schema.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return-value explanation is legitimately offloaded and the action-to-return mapping is a bonus. Still, for a 6-parameter networked tool with zero annotation coverage, the missing api_key/query_type/max_results semantics leave the definition short of fully callable.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It adds meaning for query ("pass CID as query", "pass SMILES as query") and threshold (0-1), but api_key, query_type, and max_results are entirely undocumented in both schema and description — roughly half the parameters carry no semantics.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb and resource ("Query PubChem database") and enumerates four concrete actions with their distinct outputs. However, it does not distinguish itself from the sibling covabasic_similarity, which overlaps with its own "similarity" action, so the boundary from that alternative is left unaddressed.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The action list effectively routes the agent: lookup for name/CAS/SMILES/InChIKey, smiles for name→SMILES resolution, properties for CID-based property fetch, similarity for Tanimoto search. It gives clear when-to-use context per action, but never states when to prefer a sibling tool or any exclusions/prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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