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CovaSyn Chemistry Tools

covabasic_name_to_structure

Turn systematic chemical names into structures (OPSIN) — the inverse of covabasic_iupac_name.

Parses up to 50 English IUPAC / systematic names per call into canonical
SMILES and InChIKey with OPSIN, a deterministic grammar-based parser. It
does not look anything up: trade names, abbreviations, typos and
non-English names come back with `smiles=null` rather than a guess.
Translate a German or Chinese name to English first.

Returns: `{results: [{name, smiles, inchikey}], engine}`, or
`{error, reason}` (reason "no_java" when the server has no Java runtime).

Input Schema

NameRequiredDescriptionDefault
namesYes
api_keyNo

Output Schema

NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. Added

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden and does most of it well: it discloses the deterministic grammar-based parsing model, the no-lookup failure behavior (null instead of a guess), the 50-name-per-call cap, the response shape, and the `{error, reason}` case including the specific `no_java` server-dependency failure. The one uncovered behavioral trait is the `api_key` parameter — nothing says whether it is required, optional, or what it authenticates.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Front-loaded with the one-line purpose and inverse relationship, then constraints, then return shape — a sensible order. Every sentence carries information, though the 'Returns:' block partly restates the output schema that already exists.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a two-parameter batch conversion tool with no annotations, the description supplies the parsing model, input constraints, failure semantics, and error reasons an agent needs to call it correctly. The remaining gap is the authentication parameter, which is the only thing an agent could get wrong here.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It adds real meaning for `names` — English-only, systematic/IUPAC, an array processed up to 50 per call — but says nothing at all about `api_key`, leaving one of two parameters completely undocumented. Partial compensation warrants a mid score.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a concrete verb and resource — converting systematic names into structures via OPSIN — and positions itself explicitly as 'the inverse of covabasic_iupac_name', which lets an agent separate it from that sibling without opening either schema. The named engine and output artifacts (SMILES, InChIKey) further sharpen the purpose.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Gives clear when-to-use (English IUPAC/systematic names) and concrete when-not cases: trade names, abbreviations, typos, and non-English names return `smiles=null` rather than a guess, and it advises translating German/Chinese names first. What is missing is a pointer to the actual alternative (e.g. a lookup tool such as covabasic_pubchem) for the inputs it declines to handle — 'it does not look anything up' implies one exists but never names it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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