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CovaSyn Chemistry Tools

covabasic_fingerprint

Generate molecular fingerprints: Morgan (ECFP4), MACCS keys, RDKit topological. Returns bit vectors as hex strings.

Input Schema

NameRequiredDescriptionDefault
smilesYes
api_keyNo

Output Schema

NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

C2.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It does not say whether all three fingerprint types are returned or whether the caller selects one - and the schema has no selection parameter, leaving the core behavior ambiguous. It also omits cost, auth, and rate-limit context, though the 'hex strings' note does hint at output shape.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two tight sentences with the operation front-loaded and the output form trailing; nothing is wasted. It could have used the second sentence to resolve the fingerprint-selection ambiguity instead of stating return format already covered by the output schema.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a compute tool with zero annotation coverage, 0% parameter documentation, and no selection parameter for the three listed fingerprint types, the description leaves the key calling question unanswered: which fingerprint do I get? The presence of an output schema excuses it from explaining return values, but not from this gap.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so both parameters are undocumented in structured data. The description never clarifies that 'smiles' expects a SMILES string or what 'api_key' is for, leaving the description unable to compensate for the coverage gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb ('Generate') and resource ('molecular fingerprints') and enumerates the three fingerprint flavors (Morgan/ECFP4, MACCS, RDKit topological). This distinguishes it from siblings like covabasic_similarity or covams_predict_fingerprint, though it does not name those siblings explicitly.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No when-to-use or when-not-to-use guidance, no mention of prerequisites, and no routing to alternatives such as covabasic_similarity (which consumes fingerprints) or covams_predict_fingerprint. The agent must infer usage purely from the tool name.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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